Bioinformatics Lab Dr. Arturo Melo

INDICASAT AIP, Panama

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Mycobacterium bovis genome sequencing for molecular epidemiology

This is a project carried out by Dr. Amador Goodridge group. Associated sequence data is accessible via the following links from NCBI/EMBL-EBI: PRJNA267480, PRJEB23681 and PRJEB29408.

Publications and presentations

  • Juan Domínguez, Fermín Acosta, Laura Pérez-Lago, Dilcia Sambrano, Victoria Batista, Carolina De La Guardia, Estefanía Abascal, Alvaro Chiner-Oms, Iñaki Comas, Prudencio González, Jaime Bravo, Pedro Del Cid, Samantha Rosas, Patricia Muñoz, Amador Goodridge, Darío García de Viedma; Simplified model to survey tuberculosis transmission in countries without systematic molecular epidemiology programs. Emerg Infect Dis. 2019, https://doi.org/10.3201/eid2503.181593
  • Acosta, F.; Chernyaeva, E.; Mendoza, L.; Sambrano, D.; Correa, R.; Rotkevich, M.; Tarté, M.; Hernández, H.; Velazco, B.; Escobar, C.; Waard, J.; Goodridge, A. (2015) Mycobacterium bovis in Panama, 2013. Emerging Infectious Diseases, 21(6).

Resources

Raw MiSeq reads for nine Mycobacterium bovis isolates were deposited in the Sequence Read Archive (SRA) under accession codes: